# Changelog

## Score

- CAI 52 → 47 (-4.5)

## Lenses

- Code Health 79 → 79 (+0.3)
- Architecture 98 → 98 (+0.0)
- Maturity 49 → 39 (-10.3)
- Readiness 43 → 36 (-6.6)
- Security 57 → 67 (+9.3)

## Resolved (10)

- Documentation: no project overview (src/assembly/assembly/MarkupData/imzML/README.md)
- Documentation: no project overview (src/metadb/Chemoinformatics/SDF/README.md)
- Documentation: no project overview (src/mzmath/TargetedMetabolomics/test/PKanalysis/README.md)
- Off the main sequence: MetabolomeXchange
- Off the main sequence: ProteoWizard.Interop
- Secret: generic-api-key (visual/LCMS_ms1feature_3D_canvas/index.html)
- Split assembly-netcore5
- Split chemoinformatics-netcore5
- Split massbank.NET5(net10.0-windows)
- Thin analysable surface across projects

## New (1118)

- Concentrated knowledge decay
- DualRegionUnionPlot.DrawColorBar (cognitive 17) (src/visualize/MsImaging/Plot/DualRegionUnionPlot.vb)
- High secret: WD-SECRET-0005 (Assembly/ProteoWizard.d/httpd/HTTP_SERVER/demo/start.sh)
- High secret: WD-SECRET-0005 (spectrum/ProteoWizard.d/httpd/HTTP_SERVER/demo/start.sh)
- Hotspot: src/visualize/plot/ChromatogramPlot/TICplot.vb (src/visualize/plot/ChromatogramPlot/TICplot.vb)
- Most significant orphaned file (src/metadb/Lipidomics/Annotation/LipidomicsConverter.vb)
- Most significant orphaned file (src/metadb/Lipidomics/MsCharacterization/LipidEieioMsmsCharacterization.vb)
- Most significant orphaned file (src/metadb/Lipidomics/MsCharacterization/MsmsCharacterization.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzDIA/LCLipidomics.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzDIA/MolecularSpectrumPool.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzDIA/MoleculeNetworking.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzDIA/Oligonucleotide_MS.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzDIA/Taxonomy.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzDIA/metaDNA.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzDIA/ms2_simulator.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzkit/annotations/HMDB.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzkit/annotations/foodb.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzkit/assembly/Assembly.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzkit/assembly/GCMSData.vb)
- Orphaned file (Rscript/Library/mzkit_app/src/mzkit/assembly/MzPackAccess.vb)
- …and 1098 more

## Changes since last survey

- 5 commits — 2 feature/other, 3 fixes

## By area

- Rscript/Library — 3 commits
- src/visualize — 2 commits

## Notable commits

- fix: fix for the plot module re-construct error
- fix: fix of the data plots namespace reference error
- fix: fix of the invalid namespace reference error
- change: Update MRMQCReport.vb
- change: Update MRMQCReport.vb

## Architecture

- Unchanged — 5 containers · 0 contexts · 0 edges